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1. MultiK MultiK Public

   MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via a multi-resolution perspective.

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2. DNA-based-predictors-of-non-genetic-cancer-phenotypes DNA-based-predictors-of-non-genetic-cancer-phenotypes Public

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3. PAM50_ER_HER2_normalization PAM50_ER_HER2_normalization Public

   Python code to apply the PAM50 gene normalization as in PMID 38546612

   Jupyter Notebook 1 2

4. PAM50_classifier PAM50_classifier Public

   Original PAM50 code from Parker et al., JCO 2009, PMID: 19204204

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5. Breast-Cancer-Modules Breast-Cancer-Modules Public

   Gene expression modules used in the Perou Lab for breast cancer data exploration, machine learning analyses, etc.

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6. iGES_scores iGES_scores Public

   Prognostic value of immune gene-expression signatures versus tumor-infiltrating lymphocytes in early-stage HER2-positive breast cancer: a correlative analysis of CALGB 40601 and PAMELA trials

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