Last mile 1

.github/workflows/code-quality.yml

@@ -0,0 +1,40 @@
+name: Code Quality
+
+on:
+  push:
+    branches: [main]
+  pull_request:
+    branches: [main]
+
+permissions:
+  contents: read
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+jobs:
+  code-quality:
+    runs-on: ubuntu-24.04
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.12"
+
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install ruff ty numpy scipy pytest
+
+      - name: Check formatting with Ruff
+        run: ruff format --check src/ tests/
+
+      - name: Lint with Ruff
+        run: ruff check src/ tests/
+
+      - name: Type check with ty
+        run: ty check src/

.github/workflows/release.yml

@@ -0,0 +1,113 @@
+# .github/workflows/release.yml
+name: "Build & Publish"
+
+on:
+  release:
+    types: [published]
+  workflow_dispatch:
+
+permissions:
+  contents: read
+
+concurrency:
+  group: ${{ github.workflow }}
+  cancel-in-progress: true
+
+jobs:
+  build-wheels:
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-24.04, macos-15]
+
+    steps:
+      - uses: actions/checkout@v6
+        with:
+          fetch-depth: 0  # Required for setuptools-scm to detect version from git tags
+
+      - uses: actions/setup-python@v6
+        with:
+          python-version: "3.12"   # host Python; cibuildwheel builds all others
+
+      - name: Clean build artifacts
+        run: rm -rf dist/ build/ *.egg-info wheelhouse/
+
+      - name: Install GCC, LLVM and OpenMP (macOS)
+        if: runner.os == 'macOS'
+        run: brew install gcc llvm libomp
+
+      - name: Install cibuildwheel
+        run: python -m pip install cibuildwheel==3.3.1
+
+      - name: Build wheels
+        env:
+          CIBW_BUILD: "cp310-* cp311-* cp312-* cp313-* cp314-*"
+          CIBW_SKIP: "pp* *-musllinux_* cp*-manylinux_i686 cp31?t-*"
+          CIBW_TEST_COMMAND: "pytest -q {project}/tests -m 'not integration' -x"
+          CIBW_TEST_EXTRAS: "test"
+          CIBW_ENVIRONMENT: >
+            OMP_NUM_THREADS=1
+            OPENBLAS_NUM_THREADS=1
+          CIBW_BEFORE_BUILD_LINUX: |
+            yum -y install openblas-devel
+            find /usr/include -name cblas.h -print
+          CIBW_ENVIRONMENT_LINUX: >
+            CPPFLAGS="-I/usr/include/openblas"
+            CFLAGS="-I/usr/include/openblas"
+            LD_LIBRARY_PATH="/usr/lib64:$LD_LIBRARY_PATH"
+            CMAKE_ARGS="-DBLAS_LIBRARIES=/usr/lib64/libopenblas.so
+              -DBLAS_INCLUDE_DIR=/usr/include/openblas
+              -DCMAKE_CXX_FLAGS=-I/usr/include/openblas
+              -DCMAKE_C_FLAGS=-I/usr/include/openblas"
+            OPENBLAS_NUM_THREADS=1
+            OMP_NUM_THREADS=1
+          CIBW_ENVIRONMENT_MACOS: >
+            MACOSX_DEPLOYMENT_TARGET=15.0
+            FC=gfortran-14
+            OpenMP_ROOT=/opt/homebrew/opt/libomp
+            CMAKE_ARGS="-DCMAKE_Fortran_COMPILER=gfortran-14
+              -DOpenMP_ROOT=/opt/homebrew/opt/libomp
+              -DCMAKE_CXX_FLAGS=-I/opt/homebrew/opt/libomp/include
+              -DCMAKE_C_FLAGS=-I/opt/homebrew/opt/libomp/include
+              -DCMAKE_SHARED_LINKER_FLAGS=-L/opt/homebrew/opt/libomp/lib
+              -DCMAKE_EXE_LINKER_FLAGS=-L/opt/homebrew/opt/libomp/lib"
+          CIBW_ARCHS_MACOS: arm64
+        run: python -m cibuildwheel --output-dir wheelhouse
+
+      - name: Build sdist
+        if: runner.os == 'Linux'
+        run: python -m pip install build && python -m build --sdist -o wheelhouse
+
+      - name: Upload artifacts
+        uses: actions/upload-artifact@v6
+        with:
+          name: wheels-${{ runner.os }}
+          path: wheelhouse/*
+
+  publish:
+    needs: build-wheels
+    runs-on: ubuntu-24.04
+    if: github.event_name == 'release' || github.event_name == 'workflow_dispatch'
+    permissions:
+      id-token: write
+    steps:
+      - uses: actions/download-artifact@v7
+        with:
+          name: wheels-Linux
+          path: dist
+
+      - uses: actions/download-artifact@v7
+        with:
+          name: wheels-macOS
+          path: dist
+
+      - name: Flatten artifacts
+        run: |
+          mkdir -p dist/flat
+          find dist -name '*.whl' -exec cp {} dist/flat/ \;
+          find dist -name '*.tar.gz' -exec cp {} dist/flat/ \;
+
+      # - uses: pypa/gh-action-pypi-publish@v1.13.0
+      #   with:
+      #     packages-dir: dist/flat

.github/workflows/test.macos.yml

@@ -1,37 +1,61 @@
 name: Test MacOS
 
 on:
-  push:
-    branches:
-      - '**'
+  # push:
+  #   branches:
+  #     - '**'
   pull_request:
-    branches: [ main ]
+    branches: [main]
 
-jobs:
+permissions:
+  contents: read
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
 
+jobs:
   test:
     name: Testing ${{matrix.os}} py-${{matrix.python-version}}
     runs-on: ${{matrix.os}}
 
     strategy:
       matrix:
-        os: ['macos-latest']
-        python-version: ['3.11', '3.12']
+        os: ['macos-15']
+        python-version: ['3.12']
 
-    steps:
-      - uses: actions/checkout@v2
+    env:
+      HOMEBREW_NO_AUTO_UPDATE: "1"
 
-      - name: Install the latest version of uv
-        uses: astral-sh/setup-uv@v5
+    steps:
+      - uses: actions/checkout@v4
 
-      - run: which brew
-      - run: brew install gcc openblas lapack libomp
-      - run: ls /opt/homebrew/bin/
-      - run: which gfortran-14
+      - name: Install Homebrew dependencies
+        run: |
+          brew install gcc libomp llvm
 
-      - run: FC=gfortran-14 make env_uv python_version=${{ matrix.python-version }}
+      - name: Set up uv
+        uses: astral-sh/setup-uv@v5
+        with:
+          python-version: ${{ matrix.python-version }}
+
+      - name: Build & install (macOS only)
+        env:
+          # Set Fortran compiler to Homebrew GCC
+          FC: gfortran-14
+          CMAKE_PREFIX_PATH: /opt/homebrew
+          # Help CMake find OpenMP
+          OpenMP_ROOT: /opt/homebrew/opt/libomp
+          # Pass CMake arguments for explicit compiler selection
+          CMAKE_ARGS: >-
+            -DCMAKE_Fortran_COMPILER=gfortran-14
+            -DOpenMP_ROOT=/opt/homebrew/opt/libomp
+        run: |
+          # Install build dependencies first
+          uv pip install scikit-build-core pybind11 setuptools setuptools-scm
+          # Build and install with test dependencies
+          uv pip install -e .[test] --verbose
+
+      - name: Run unit tests (exclude integration tests)
+        run: uv run pytest -m "not integration" -v
 
-      - run: make test
-      - run: make format
-      - run: FC=gfortran-14 make build
-      - run: make test-dist

.github/workflows/test.ubuntu.yml

@@ -1,34 +1,48 @@
 name: Test Ubuntu
 
 on:
-  push:
-    branches:
-      - '**'
+  # push:
+  #   branches:
+  #     - '**'
   pull_request:
-    branches: [ main ]
+    branches: [main]
 
-jobs:
+permissions:
+  contents: read
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
 
+jobs:
   test:
     name: Testing ${{matrix.os}} py-${{matrix.python-version}}
     runs-on: ${{matrix.os}}
 
     strategy:
       matrix:
-        os: ['ubuntu-latest']
-        python-version: ['3.11', '3.12']
+        os: ['ubuntu-24.04']
+        python-version: ['3.12']
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
 
-      - name: Install the latest version of uv
-        uses: astral-sh/setup-uv@v5
+      - name: Install system dependencies
+        run: |
+          sudo apt-get update
+          sudo apt-get install -y gfortran libomp-dev libopenblas-dev
 
-      - run: sudo apt-get install -y gcc libomp-dev libopenblas-dev
-
-      - run: make env_uv python_version=${{ matrix.python-version }}
-
-      - run: make test
-      - run: make format
-      - run: make build
-      - run: make test-dist
+      - name: Set up uv
+        uses: astral-sh/setup-uv@v5
+        with:
+          python-version: ${{ matrix.python-version }}
+
+      - name: Build & install
+        run: |
+          # Install build dependencies first
+          uv pip install scikit-build-core pybind11 setuptools setuptools-scm
+          # Build and install with test dependencies
+          uv pip install -e .[test] --verbose
+
+      - name: Run unit tests (exclude integration tests)
+        run: uv run pytest -m "not integration" -v