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cleaned up before running on more pathways#35

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tbarbazuk wants to merge 4 commits into
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refactored_logic_network_generator.py
Open

cleaned up before running on more pathways#35
tbarbazuk wants to merge 4 commits into
mainfrom
refactored_logic_network_generator.py

added in stoichiomtery. Runs well, more changes fortcoming

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