Automate checking results when testing#2
Open
molecules wants to merge 361 commits into
Open
Conversation
versions of the Illumina DAP < 1.3
Commented a print statement in RNAseq.sh. Updated RNAseq_process_data.sh ot allow -D to accept a command-line argument, increased RAM request from 5G to 10G in bsub statement.
…1 instead of bowtie2.
…wtie2 by default now.
Added that bowtie2 is required for test to README.
…d problems. Fixed.
Above scripts generate more run log files. Modified output of qc.sh to include more stats.
Added a nonewtranscripts option.
Updated how a GTF file is used.
Added script to count mapped reads in a bam file.
Conflicts: bin/RNAseq_process_data.sh
Added error and output files in bsub invocation
…d minimum length.
…ry on IRCF BioCluster.
Refactored to faciliate receiving input as a piped stream.
…ing separate directories for each experiment)
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
No description provided.