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Easysearch extractframes #1076

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Easysearch extractframes #1076

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d2c5882
add 'extractframes' parameters in EasySearch.cpp for --translation-mode
LunaJang Feb 4, 2026
a8b9db4
Revert "Fix dbcan url"
LunaJang Feb 4, 2026
3a4d61f
add parameters for extractframes in easy search workflow for 'transla…
LunaJang Feb 4, 2026
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2 changes: 1 addition & 1 deletion data/workflow/databases.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -265,7 +265,7 @@ case "${SELECTION}" in
;;
"dbCAN2")
if notExists "${TMP_PATH}/download.done"; then
downloadFile "http://dbcan-hcc.unl.edu/download/dbCAN-fam-aln-V14.tar.gz" "${TMP_PATH}/msa.tar.gz"
downloadFile "https://dbcan-hcc.unl.edu/download/dbCAN-fam-aln-V14.tar.gz" "${TMP_PATH}/msa.tar.gz"
printf "14 %s\n" "$(date "+%s")" > "${TMP_PATH}/version"
touch "${TMP_PATH}/download.done"
fi
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3 changes: 3 additions & 0 deletions src/workflow/EasySearch.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -42,6 +42,9 @@ int doeasysearch(int argc, const char **argv, const Command &command, bool linse
for (size_t i = 0; i < par.extractorfs.size(); i++){
par.extractorfs[i]->addCategory(MMseqsParameter::COMMAND_EXPERT);
}
for (size_t i = 0; i < par.extractframes.size(); i++) {
par.extractframes[i]->addCategory(MMseqsParameter::COMMAND_EXPERT);
}
for (size_t i = 0; i < par.splitsequence.size(); i++) {
par.splitsequence[i]->addCategory(MMseqsParameter::COMMAND_EXPERT);
}
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