ChIP-seq

My Scripts for ChIP-seq data analysis

Name		Name	Last commit message	Last commit date
Latest commit History 203 Commits
misc		misc
test		test
.fuse_hidden0000000400000001		.fuse_hidden0000000400000001
LICENSE		LICENSE
README.md		README.md
bam2bwForChIP		bam2bwForChIP
bam2mapStat		bam2mapStat
bam2reproducibility		bam2reproducibility
bed2binCoverage		bed2binCoverage
bed2blockGroups		bed2blockGroups
bed2conservation		bed2conservation
bed2coverage		bed2coverage
bed2coverageMatrix.R		bed2coverageMatrix.R
bed2direction		bed2direction
bed2direction.R		bed2direction.R
bed2direction.pl		bed2direction.pl
bed2nfrdip		bed2nfrdip
bed2nfrdipV2		bed2nfrdipV2
bed2shuffle		bed2shuffle
bed2sort		bed2sort
bed2superEnhancer		bed2superEnhancer
bed2superEnhancer.R		bed2superEnhancer.R
bed2superEnhancer.py		bed2superEnhancer.py
bedStat.R		bedStat.R
binom.R		binom.R
binomTest.sh		binomTest.sh
blockbuster.x		blockbuster.x
blockbuster_threshold_nfr		blockbuster_threshold_nfr
blockbuster_threshold_nfr.R		blockbuster_threshold_nfr.R
chip2geneExprCor		chip2geneExprCor
chip2quality		chip2quality
commonNFR.pl		commonNFR.pl
confusion2performance.pl		confusion2performance.pl
coor2bg		coor2bg
coor2expr		coor2expr
coor2nfrdip		coor2nfrdip
coor2reads		coor2reads
counts2homer.pl		counts2homer.pl
diffPeaks.r		diffPeaks.r
estimateSizeFactor.pl		estimateSizeFactor.pl
extractMotifs		extractMotifs
file2line		file2line
filterBedByClassFreq		filterBedByClassFreq
findNFRAll.pl		findNFRAll.pl
fitDistr.R		fitDistr.R
goAna		goAna
goAna.R		goAna.R
gtf2expr		gtf2expr
gtf2expr.R		gtf2expr.R
homer2seq		homer2seq
matrix2fitDistr.R		matrix2fitDistr.R
matrix2tsne.R		matrix2tsne.R
meme2homer.pl		meme2homer.pl
mergeBed.pl		mergeBed.pl
motifAna		motifAna
motifDynAna		motifDynAna
motifDynAna.R		motifDynAna.R
motifStatAna		motifStatAna
motifStatAna.R		motifStatAna.R
multiClassMotifAna		multiClassMotifAna
multiIntersect2venn.R		multiIntersect2venn.R
multiIntersectBed.sh		multiIntersectBed.sh
multiJoin		multiJoin
nfr2ucsc.pl		nfr2ucsc.pl
nfrAnaAll		nfrAnaAll
nfrAnaAllMerged		nfrAnaAllMerged
nfrDynAna		nfrDynAna
nfrDynAna.R		nfrDynAna.R
nfrDynAna2Matrix		nfrDynAna2Matrix
nfrDynAna2Matrix2SortedHeatmap		nfrDynAna2Matrix2SortedHeatmap
nfrDynAna2MatrixGene		nfrDynAna2MatrixGene
nfrDynAna2MatrixGene_v1		nfrDynAna2MatrixGene_v1
nfrDynAnaV1.R		nfrDynAnaV1.R
nfrDynAnaWithExpr.R		nfrDynAnaWithExpr.R
nfrPlot		nfrPlot
ngsPlot		ngsPlot
ngsPlot.R		ngsPlot.R
ngsPlotGene		ngsPlotGene
plotHomerResults.r		plotHomerResults.r
pnorm.R		pnorm.R
qnorm.R		qnorm.R
randomNfrAna		randomNfrAna
randomNfrAna.R		randomNfrAna.R
rep2mean		rep2mean
tabEdit		tabEdit
validateBlockbuster.pl		validateBlockbuster.pl

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