Structural pangenomics pipeline for Streptococcus pneumoniae (n=36) using Prokka annotation, PPanGGOLiN graph partitioning, IQ-TREE phylogenomics, and AMRFinderPlus profiling.
bioinformatics genomics phylogenomics pangenomics genomic-epidemiology streptococcus-pneumoniae ppanggolin amr-profiling
-
Updated
Apr 6, 2026 - Python