Curated MATLAB portfolio of reduced-order physiological models in circulation, respiratory mechanics, gas exchange, and feedback control.
This is the code repository for the paper "Optimizing ODE-derived Synthetic Data for Transfer Learning in Dynamical Biological Systems".
MIRELLA: A mathematical model explains the effect of miRNA (MI) REgulation on intracellular resource aLLocAtion
UAI 2022: "Capturing Actionable Dynamics with Structured Latent Ordinary Differential Equations"
This repository explores the geometric stability of complex biochemical networks using the VNAE framework.
Forced ratched model of molecular motors.
Bottom-up dynamical modeling of biological systems using ordinary, partial, and stochastic differential equations.
Final project for the course Simulation and Modeling for Biological Systems.
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