Open Source Cross-Platform C++ library to read CZI image files
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Sep 30, 2022 - C++
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czi
Here are 21 public repositories matching this topic...
This repository provides a collection of tools to simplify reading CZI (Carl Zeiss Image) pixel and metadata in Python.
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Apr 11, 2026 - Python
Material to showcase and test several tools and packages releated to ZEN, CZI image files and python packages related to those topics
python metadata ai deep-learning scripting image-processing segmentation zen image-analysis czi czmodel pylibczirw zenapi zen-api
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Feb 25, 2026 - Jupyter Notebook
napari plugin to open CZI image files and their metadata
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Apr 10, 2026 - Python
Python module utilizing libCZI for reading Zeiss CZI files.
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Mar 11, 2020 - Python
Application to "Collaborative Computational Tools for the Human Cell Atlas" https://chanzuckerberg.com/initiatives/rfa
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Aug 27, 2017
CITE-seq profiling of human PBMCs at baseline and activation conditions
visualization shiny baseline single-cell single-cell-rna-seq czi lps cite-seq immune-system chan-zuckerberg-initiative human-cell-atlas pbmc cell-hashing anti-cd3 anti-cd28
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Sep 12, 2023 - R
Small python package to simplify reading CZI Image Metadata (*.czi)
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Mar 25, 2023 - Jupyter Notebook
Speedy Carl Zeiss Image (.czi) Divination
c cli extraction image-processing medical-imaging work-in-progress zeiss czi extraction-api image-ination
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May 3, 2019 - C
A repository that collects our findings from our efforts under the CZI/HCA project.
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Aug 10, 2018 - CSS
read CZI-documents from Wolfram Language
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Mar 26, 2023 - CMake
converts your czi images to pngs
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Dec 19, 2024 - Python
tool for adding an image-pyramid to a CZI document
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Mar 18, 2026 - C++
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Nov 21, 2025 - Python
A python program to convert CZI image to PNG image.
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Jan 24, 2025 - Python
An application that is responsive to CZI's RFA.
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Nov 13, 2018 - CSS
A specialized batch-processing pipeline for Zeiss CZI files. Optimized for ApoTome & Brain sections. Fixes hyperstack dimensions, recovers LUTs, and removes shading via rolling-ball pre-processing.
metadata bioinformatics imagej fiji mit-license batch-script image-stitching microscopy jython life-sciences whole-slide-imaging czi zeisshack zeiss-czi-files microscopy-data bioimage vibe-coding
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Feb 13, 2026 - Python
Manage and validate repository health by automating checks for code quality, dependencies, and documentation consistency.
cloud latex proposal cloud-computing manuscript virtual-desktops health-data huawei flexdashboard report-template desktop-virtualization manubot czi hcna hcmut
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Apr 12, 2026 - JavaScript
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