Here you will find all the code needed to run the PaleoProPhyler!
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Updated
Jan 29, 2025 - Python
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palaeoproteomics
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Transformer-based de novo sequencing (Casanovo) + database searching with rescoring (Sage + Mokapot). For metaproteomics datasets
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Oct 6, 2025 - Jupyter Notebook
A random forest classification model for degraded BLG deamidation. A multi-level system for deamidation hotspots, asparagine vs glutamine clustering and protein level authentication using trypsin as the baseline
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Sep 16, 2025 - Jupyter Notebook
🔒 Build a secure multi-tenant JWT authentication service with Symfony 7.3 and PHP 8.2+, offering features like token rotation and OAuth 2.0 support.
tracker java tracking privacy lua protobuf internet blocklist malware luajit transformer adblock filters security-groups orthrus pihole otp-calculator palaeoproteomics
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Apr 21, 2026 - PHP
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