The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets

Dataloader for common proteomics search engine outputs into AnnData format

PACOM (Proteomics Assay COMparator) is a Java stand alone tool for visualize and compare large proteomics datasets

List of online databases and resources for Mycobacterium Tuberculosis

Analysis from Leduc and Slavov (2025): Protein degradation and growth dependent dilution substantially shape mammalian proteomes

Indexing of FASTA files for searching peptide masses and sequences

Python pipeline for Absolute Protein Quantification data analysis