creating a metadata image with opentelemetry instrumentation.

[EliseCastle23]

Integrating OpenTelemetry into the Metadata Service.

[github-actions]

The style in this PR agrees with black. ✔️

This formatting comment was generated automatically by a script in uc-cdis/wool.

[github-actions]

filepath	failed	SUBTOTAL
tests/test_aggregate_mds.py	1	1
tests/test_discoverypage.py	1	1
TOTAL	2	2

Please find the detailed integration test report here

[github-actions]

filepath	passed	error	SUBTOTAL
tests/test_ras_authn.py	0	2	2
tests/test_study_viewer.py	0	1	1
tests/test_pfb_export.py	0	4	4
tests/test_discoverypage.py	1	0	1
tests/test_aggregate_mds.py	1	0	1
TOTAL	2	7	9

Please find the detailed integration test report here

[github-actions]

filepath	passed	SUBTOTAL
tests/test_discoverypage.py	1	1
tests/test_aggregate_mds.py	1	1
TOTAL	2	2

Please find the detailed integration test report here

[github-actions]

filepath	passed	failed	SUBTOTAL
tests/test_discoverypage.py	1	0	1
tests/test_aggregate_mds.py	0	1	1
TOTAL	1	1	2

Please find the detailed integration test report here

[github-actions]

filepath	passed	SUBTOTAL
tests/test_discoverypage.py	1	1
tests/test_aggregate_mds.py	1	1
TOTAL	2	2

Please find the detailed integration test report here

[github-actions]

filepath	passed	SUBTOTAL
tests/test_discoverypage.py	1	1
tests/test_aggregate_mds.py	1	1
TOTAL	2	2

Please find the detailed integration test report here

[github-actions]

filepath	passed	SUBTOTAL
tests/test_discoverypage.py	1	1
tests/test_aggregate_mds.py	1	1
TOTAL	2	2

Please find the detailed integration test report here

[github-actions]

filepath	passed	SUBTOTAL
tests/test_discoverypage.py	1	1
tests/test_aggregate_mds.py	1	1
TOTAL	2	2

Please find the detailed integration test report here

[github-actions]

filepath	passed	failed	SUBTOTAL
tests/test_discoverypage.py	1	0	1
tests/test_aggregate_mds.py	0	1	1
TOTAL	1	1	2

Please find the detailed integration test report here

[github-actions]

filepath	failed	SUBTOTAL
tests/test_aggregate_mds.py	1	1
tests/test_discoverypage.py	1	1
TOTAL	2	2

Please find the detailed integration test report here

[github-actions]

filepath	passed	SUBTOTAL
tests/test_discoverypage.py	1	1
tests/test_aggregate_mds.py	1	1
TOTAL	2	2

Please find the detailed integration test report here

[github-actions]

filepath	passed	SUBTOTAL
tests/test_discoverypage.py	1	1
tests/test_aggregate_mds.py	1	1
TOTAL	2	2

Please find the detailed integration test report here

[github-actions]

filepath	passed	skipped	SUBTOTAL
tests/test_oauth2.py	15	0	15
tests/test_dicom_viewer.py	4	0	4
tests/test_centralized_auth.py	16	0	16
tests/test_graph_submit_and_query.py	13	1	14
tests/test_audit_service.py	3	3	6
tests/test_presigned_url.py	7	0	7
tests/test_pfb_export.py	1	0	1
tests/test_guppy_service.py	8	0	8
tests/test_dbgap.py	4	1	5
tests/test_data_upload.py	8	1	9
tests/test_requestor.py	5	0	5
tests/test_drs_endpoint.py	4	0	4
tests/test_study_viewer.py	3	0	3
tests/test_user_token.py	5	0	5
tests/test_user_data_library.py	2	1	3
tests/test_oidc_client.py	2	0	2
tests/test_login_page.py	2	0	2
tests/test_gen3client.py	1	0	1
tests/test_manifest_service.py	1	0	1
tests/test_discoverypage.py	1	0	1
tests/test_workspace.py	1	0	1
tests/test_aggregate_mds.py	1	0	1
tests/test_google_data_access.py	1	0	1
tests/test_homepage.py	1	0	1
tests/test_client_credentials.py	1	0	1
tests/test_gen3_workflow.py	0	11	11
tests/test_ras_authn.py	0	3	3
tests/test_gen3ff_landing_page.py	0	2	2
tests/test_register_user.py	0	2	2
tests/test_etl.py	0	1	1
TOTAL	110	26	136

Please find the detailed integration test report here

Please find the Github Action logs here

[github-actions]

filepath	passed	SUBTOTAL
tests/test_discoverypage.py	1	1
tests/test_aggregate_mds.py	1	1
TOTAL	2	2

Please find the detailed integration test report here

Please find the Github Action logs here

[github-actions]

Failed to Prepare CI environment

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[github-actions]

Failed to Prepare CI environment

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[github-actions]

filepath	passed	SUBTOTAL
tests/test_discoverypage.py	1	1
tests/test_aggregate_mds.py	1	1
TOTAL	2	2

Please find the detailed integration test report here

Please find the Github Action logs here

[github-actions]

filepath	passed	SUBTOTAL
tests/test_discoverypage.py	1	1
tests/test_aggregate_mds.py	1	1
TOTAL	2	2

Please find the detailed integration test report here

Please find the Github Action logs here

[github-actions]

filepath	passed	SUBTOTAL
tests/test_discoverypage.py	1	1
tests/test_aggregate_mds.py	1	1
TOTAL	2	2

Please find the detailed integration test report here

Please find the Github Action logs here

[github-actions]

filepath	passed	SUBTOTAL
tests/test_discoverypage.py	1	1
tests/test_aggregate_mds.py	1	1
TOTAL	2	2

Please find the detailed integration test report here

Please find the Github Action logs here

[github-actions]

filepath	passed	SUBTOTAL
tests/test_discoverypage.py	1	1
tests/test_aggregate_mds.py	1	1
TOTAL	2	2

Please find the detailed integration test report here

Please find the Github Action logs here

[github-actions]

filepath	passed	SUBTOTAL
tests/test_discoverypage.py	1	1
tests/test_aggregate_mds.py	1	1
TOTAL	2	2

Please find the detailed integration test report here

Please find the Github Action logs here

[github-actions]

filepath	passed	SUBTOTAL
tests/test_discoverypage.py	1	1
tests/test_aggregate_mds.py	1	1
TOTAL	2	2

Please find the detailed integration test report here

Please find the Github Action logs here

[github-actions]

filepath	passed	SUBTOTAL
tests/test_discoverypage.py	1	1
tests/test_aggregate_mds.py	1	1
TOTAL	2	2

Please find the detailed integration test report here

Please find the Github Action logs here

[github-actions]

Test summary after running integration tests

filepath	passed	failed	SUBTOTAL
tests/test_discoverypage.py	1	0	1
tests/test_aggregate_mds.py	0	1	1
TOTAL	1	1	2

Test summary after rerunning failed integration tests

filepath	error	SUBTOTAL
tests/test_aggregate_mds.py	1	1
tests/test_discoverypage.py	1	1
tests/test_etl.py	1	1
tests/test_pfb_export.py	1	1
tests/test_ras_authn.py	1	1
tests/test_study_viewer.py	1	1
TOTAL	6	6

Please find the detailed integration test report here

Please find the detailed integration test report after rerunning failed tests here

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[Avantol13]

Thanks for looking into this and for this PoC! We really need better tracing, so I'm looking into how to use this in a new service. A few things I want to improve from this example PoC: more explicit installation, & less boilerplate nesting and tracing logic in the code (this needs to be tucked away in a decorator or function calls in a separate module - it makes the readability of the actual logic a bit fraught if it's not).

I'm not partial to the "auto instrumentation". I would rather be more surgical and do the installs and have the packages reflected in the Python explicitly (so if we need to bump specific packages for security beyond their default auto setup, or the setup randomly break or something, we have more flexibility and don't have broken builds). I appreciate the ease of use and magic of the Dockerfile install, but I don't like not knowing exactly what additional things it's bringing in at build time.