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63 changes: 63 additions & 0 deletions .github/workflows/R-CMD-check-SpatialDataPlot.yaml
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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
push:
branches: [main, devel]
pull_request:

name: check-SpatialData.Plot

permissions: read-all

jobs:
R-CMD-check:
runs-on: ${{ matrix.config.os }}

name: ${{ matrix.config.os }} (${{ matrix.config.r }})

strategy:
fail-fast: false
matrix:
config:
- {os: macos-latest, r: 'release'}
- {os: windows-latest, r: 'release'}
- {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'}
- {os: ubuntu-latest, r: 'release'}

env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
R_KEEP_PKG_SOURCE: yes

steps:
- uses: actions/checkout@v6
with:
repository: HelenaLC/SpatialData.Plot

- uses: r-lib/actions/setup-pandoc@v2

- uses: r-lib/actions/setup-r@v2
with:
r-version: ${{ matrix.config.r }}
http-user-agent: ${{ matrix.config.http-user-agent }}

# This step can be removed once SpatialData is on Bioconductor, and is removed from Remotes: in SpatialData.plot's DESCRIPTION.
- name: Avoid SpatialData version conflict
run: |
desc <- read.dcf("DESCRIPTION")
desc[, "Remotes"] <- sub("HelenaLC/SpatialData,\\s*", "", desc[, "Remotes"])
write.dcf(desc, "DESCRIPTION")
shell: Rscript {0}

- uses: r-lib/actions/setup-r-dependencies@v2
with:
# Install SpatialData from the commit that triggered the workflow
extra-packages: |
any::rcmdcheck
HelenaLC/SpatialData@${{ github.sha }}
needs: check

- uses: r-lib/actions/check-r-package@v2
with:
upload-snapshots: true
build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")'
error-on: '"error"'
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