Repositories list

• sheepdog_testing_suite

  Public
  Test suite for BioLockJ development team.

  HTML

  •88 forks•33 stars•145145 issues•00 pull requests•Updated Jun 14, 2022Jun 14, 2022

• BioLockJ

  Public
  BioLockJ is an automated metagenomics pipeline for WGS/16s sequence analysis. The extensible Java framework writes/executes bash scripts to call external appl…

  Java

  •1515 forks•55 stars•00 issues•00 pull requests•Updated Jun 10, 2022Jun 10, 2022

• FastQC

  Public
  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 27, 2021Jul 27, 2021

• blj_ext_modules

  Public
  Additional modules that run as part of BioLockJ but are not part of the base program

  66 forks•11 star•22 issues•00 pull requests•Updated Jul 26, 2021Jul 26, 2021

• ShowTestVar

  Public template
  An example of a BioLockJ module. It prints the current value of an environment variable.

  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 24, 2021Jul 24, 2021

• HelloModules

  Public
  Tutorial modules for BioLockJ.

  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 24, 2021Jul 24, 2021

• awesome_BioLockJ

  Public
  A collection of good examples of using BioLockJ.

  00 forks•00 stars•00 issues•00 pull requests•Updated Jul 21, 2021Jul 21, 2021

• shinyBioLockJ

  Public
  A GUI for BioLockJ implemented in R shiny

  R

  •

  GNU General Public License v3.0

  •11 fork•00 stars•2222 issues•00 pull requests•Updated May 26, 2021May 26, 2021

• BioLockR

  Public
  R package - the official R wrappers to interact with the BioLockJ java program from an R session.

  R

  •

  GNU General Public License v3.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated Mar 5, 2021Mar 5, 2021

• Reproducing_Research

  Public
  Published research configured as BioLockJ pipelines

  11 fork•00 stars•00 issues•00 pull requests•Updated Dec 1, 2020Dec 1, 2020