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    145 repositories

    • curator-tool-frontend

      Public
      TypeScript
      •1•1•3•0•Updated Jun 26, 2026Jun 26, 2026

    • curator-tool-llm

      Public
      The project to leverage LLMs for Reactome curation
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 26, 2026Jun 26, 2026

    • reactome_chatbot

      Public
      This is Reactome's chatbot to its database and search index
      Python
      •
      Apache License 2.0
      •12•9•28•27•Updated Jun 25, 2026Jun 25, 2026

    • reactome-curator-workflows

      Public
      Python
      •0•0•1•1•Updated Jun 25, 2026Jun 25, 2026

    • Website

      Public
      Contains the code and configuration for the website
      PHP
      •
      GNU General Public License v2.0
      •2•5•1•0•Updated Jun 25, 2026Jun 25, 2026

    • WebsiteAngular

      Public
      REACTOME is an open-source, open access, manually curated and peer-reviewed pathway database. This repository contains the main website along with the Pathway B…
      research-toolpathway-tools
      research-toolpathway-tools
      TypeScript
      •
      Apache License 2.0
      •3•0•3•0•Updated Jun 24, 2026Jun 24, 2026

    • reactome_illustrations

      Public
      This repo is used to store EHLD and icon SGV files exported from Figma
      Python
      •
      Apache License 2.0
      •0•0•0•1•Updated Jun 23, 2026Jun 23, 2026

    • ngx-reactome-base

      Public
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Jun 23, 2026Jun 23, 2026

    • diagram-exporter

      Public
      Exporter of the diagram layout to different formats (pptx, svg, png, gif, jpg, sbgn)
      Java
      •3•1•2•3•Updated Jun 22, 2026Jun 22, 2026

    • logic-network-generator

      Public
      Python
      •
      Apache License 2.0
      •0•1•0•2•Updated Jun 22, 2026Jun 22, 2026

    • release-download-directory

      Public
      Data-release-pipeline: Generation of files for the Reactome website download directory
      releasedata-release-pipelinemysql-release
      releasedata-release-pipelinemysql-release
      Java
      •1•0•10•0•Updated Jun 21, 2026Jun 21, 2026

    • release-orthoinference

      Public
      Data-release-pipeline: Orthology projection of human reactions and pathways to non-human species
      releasedata-release-pipelinemysql-release
      releasedata-release-pipelinemysql-release
      Java
      •0•0•0•3•Updated Jun 12, 2026Jun 12, 2026

    • ReactomeGSA

      Public
      R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis
      R
      •
      Other
      •5•33•23•1•Updated Jun 12, 2026Jun 12, 2026

    • graph-add-links

      Public
      This project is responsible for adding third-party reference database links to the Reactome graph database
      Java
      •0•0•0•1•Updated Jun 10, 2026Jun 10, 2026

    • release-update-dois

      Public
      Data-release-pipeline: Updates DOIs of pathways that were updated significantly between releases (these pathways will be tagged as needing a value in their doi …
      releasedata-release-pipelinemysql-release
      releasedata-release-pipelinemysql-release
      Java
      •0•1•0•0•Updated Jun 9, 2026Jun 9, 2026

    • gsa-backend

      Public
      Backend code of the Kubernetes based ReactomeGSA Analysis System
      Python
      •1•4•17•1•Updated Jun 8, 2026Jun 8, 2026

    • release-gtp2chebi-update

      Public
      This project creates ChEBI cross-references in ReferenceTherapeutic instances by mapping from Guide to Pharmacology to ChEBI identifiers
      Java
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 3, 2026Jun 3, 2026

    • release-chebi-update

      Public
      Data-release-pipeline: Synchronization of gk_central Reference Molecule instances with ChEBI (https://www.ebi.ac.uk/chebi/)
      Java
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 3, 2026Jun 3, 2026

    • content-service

      Public
      The new Reactome REST API to access the data
      Java
      •6•11•3•1•Updated May 22, 2026May 22, 2026

    • update-tracker

      Public
      A project to create and commit update tracker instances
      Java
      •0•0•0•0•Updated May 20, 2026May 20, 2026

    • diagram-converter

      Public
      Generates a set of JSON files to be consumed by the Diagram Viewer
      Java
      •3•1•0•0•Updated May 18, 2026May 18, 2026

    • graph-importer

      Public
      Converts the Reactome knowledgebase into a interconnected graph
      Java
      •4•8•0•0•Updated May 18, 2026May 18, 2026

    • graph-core

      Public
      Models the Reactome knowledgebase into a interconnected graph
      Java
      •8•22•3•3•Updated May 18, 2026May 18, 2026

    • structure-video-pipeline

      Public
      Python
      •1•0•0•0•Updated May 18, 2026May 18, 2026

    • gsa-frontend

      Public
      TypeScript
      •
      Apache License 2.0
      •1•1•4•0•Updated May 14, 2026May 14, 2026

    • reactome-mcp

      Public
      This is just a prototype for now
      TypeScript
      •
      Apache License 2.0
      •13•5•1•16•Updated May 11, 2026May 11, 2026

    • release-chebi-update-old

      Public archive
      Data-release-pipeline: Synchronization of gk_central Reference Molecule instances with ChEBI (https://www.ebi.ac.uk/chebi/)
      releasedata-release-pipelinemysql-release
      releasedata-release-pipelinemysql-release
      Java
      •0•0•1•1•Updated May 11, 2026May 11, 2026

    • reaction-exporter

      Public
      Java
      •2•0•0•0•Updated Apr 28, 2026Apr 28, 2026

    • search-indexer

      Public
      Java
      •3•0•0•2•Updated Apr 27, 2026Apr 27, 2026

    • reactome_neo4j_env

      Public
      Provides docker environment for our Neo4j databases
      Dockerfile
      •
      MIT License
      •4•0•0•0•Updated Apr 24, 2026Apr 24, 2026
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